Public data
Cancer-associated regulation of alternative splicing
Nat Struct Mol Biol. 2009 Jun;16(6):670-6
Links in this section allow the user to interactively view the data described in Venables et al. In particular it contains
Links in this section allow the user to interactively view the data described in Venables et al. In particular it contains
- Splicing data for all the simple alternative splicing events in the RefSeq database (annotation build 36.2) in breast and ovarian cancer not included in our previous studies of 600 genes in breast and ovary (subsections 1 to 6)
- Splicing data for potential Fox2 knockdown targets in cell lines and for validated targets in ovarian and breast cancer (subsections 7 and 8)
- Cartoon representation of all the splice events analyzed mapped to their corresponding encoded proteins primary structures (subsection 9)
Client public data
High-Throughput Quantification of Splicing Isoforms
RNA. 2010 Feb;16(2):442-9
- Supplementary Tables and Figures data download
- Low throughput design website here
- High throughtput design API here
- Mysql annotation database here
- Blast database here
Identification of alternative splicing markers for breast cancer
Cancer Research. 2008 Nov 15; 68(22)
Links in this section allow the user to interactively view all the data described in Venables et al., 2008. The screen for breast cancer markers was conducted in three stages:
Links in this section allow the user to interactively view all the data described in Venables et al., 2008. The screen for breast cancer markers was conducted in three stages:
- Alternative splicing events in 600 cancer associated genes were examined in two normal breast and two cancerous breast pools, click on "Breast Discovery Screen" to view this,
- Promising alternative splicing events were assayed in 21 normal and 26 cancerous samples, click on "Breast Validation Screen" to view this,
- The markers that distinguished normal from cancerous breast were assayed in a further set of assorted breast samples, click on "breast blind set" to view this.
Multiple alternative splicing markers for ovarian cancer
Cancer Research.2008 Feb;68(3):657-63.
Below is a link to the supplementary materials submitted in Klinck et al.
Below is a link to the supplementary materials submitted in Klinck et al.
Multiple and specific mRNA processing targets for the major human hnRNP proteins
Mol Cell Biol. 2008 Oct;28(19):6033-43
The link in this section allows the user to interactively view all the data described in Venables et al., 2008
Most pages contain links labelled "help" for explanations of the features (data and links) found therein.
The link in this section allows the user to interactively view all the data described in Venables et al., 2008
Most pages contain links labelled "help" for explanations of the features (data and links) found therein.